Citation: | LI Fangfang, TAO Ziwei, SHEN Yongli, WENG Yali. Research progress of blood-based DNA methylation in diagnosis of liver cancer[J]. Journal of Clinical Medicine in Practice, 2021, 25(9): 117-122. DOI: 10.7619/jcmp.20210641 |
[1] |
VILLANUEVA A. Hepatocellular carcinoma[J]. N Engl J Med, 2019, 380(15): 1450-1462. doi: 10.1056/NEJMra1713263
|
[2] |
MCGLYNN K A, PETRICK J L, LONDON W T. Global epidemiology of hepatocellular carcinoma: an emphasis on demographic and regional variability[J]. Clin Liver Dis, 2015, 19(2): 223-238. doi: 10.1016/j.cld.2015.01.001
|
[3] |
European Association for the Study of the Liver. Electronic address: easloffice@easloffice. eu, European Association for the Study of the Liver. EASL Clinical Practice Guidelines: Management of hepatocellular carcinoma[J]. J Hepatol, 2018, 69(1): 182-236. doi: 10.1016/j.jhep.2018.03.019
|
[4] |
LU L C, HSU C H, HSU C, et al. Tumor heterogeneity in hepatocellular carcinoma: facing the challenges[J]. Liver Cancer, 2016, 5(2): 128-138. doi: 10.1159/000367754
|
[5] |
中华人民共和国国家卫生健康委员会医政医管局. 原发性肝癌诊疗规范(2019年版)[J]. 临床肝胆病杂志, 2020, 36(2): 277-292. doi: 10.3969/j.issn.1001-5256.2020.02.007
|
[6] |
HE G X, CHEN Y H, ZHU C P, et al. Application of plasma circulating cell-free DNA detection to the molecular diagnosis of hepatocellular carcinoma[J]. Am J Transl Res, 2019, 11(3): 1428-1445. http://www.ncbi.nlm.nih.gov/pubmed/30972172
|
[7] |
MA K, LIU J Y, WANG Y J, et al. Relationship between plasma cell-free DNA (cfDNA) and prognosis of TACE for primary hepatocellular carcinoma[J]. J Gastrointest Oncol, 2020, 11(6): 1350-1363. doi: 10.21037/jgo-20-509
|
[8] |
ALUNNI-FABBRONI M, RÖNSCH K, HUBER T, et al. Circulating DNA as prognostic biomarker in patients with advanced hepatocellular carcinoma: a translational exploratory study from the SORAMIC trial[J]. J Transl Med, 2019, 17(1): 328. doi: 10.1186/s12967-019-2079-9
|
[9] |
LIAO W J, YANG H Y, XU H F, et al. Noninvasive detection of tumor-associated mutations from circulating cell-free DNA in hepatocellular carcinoma patients by targeted deep sequencing[J]. Oncotarget, 2016, 7(26): 40481-40490. doi: 10.18632/oncotarget.9629
|
[10] |
CHENG J M, WEI D K, JI Y, et al. Integrative analysis of DNA methylation and gene expression reveals hepatocellular carcinoma-specific diagnostic biomarkers[J]. Genome Med, 2018, 10(1): 42. doi: 10.1186/s13073-018-0548-z
|
[11] |
VILLANUEVA A, PORTELA A, SAYOLS S, et al. DNA methylation-based prognosis and epidrivers in hepatocellular carcinoma[J]. Hepatology, 2015, 61(6): 1945-1956. doi: 10.1002/hep.27732
|
[12] |
SUN K, JIANG P Y, CHAN K C, et al. Plasma DNA tissue mapping by genome-wide methylation sequencing for noninvasive prenatal, cancer, and transplantation assessments[J]. Proc Natl Acad Sci USA, 2015, 112(40): E5503-E5512. doi: 10.1073/pnas.1508736112
|
[13] |
VOGELSTEIN B, PAPADOPOULOS N, VELCULESCU V E, et al. Cancer genome landscapes[J]. Science, 2013, 339(6127): 1546-1558. doi: 10.1126/science.1235122
|
[14] |
SCHULZE K, NAULT J C, VILLANUEVA A. Genetic profiling of hepatocellular carcinoma using next-generation sequencing[J]. J Hepatol, 2016, 65(5): 1031-1042. doi: 10.1016/j.jhep.2016.05.035
|
[15] |
MONTAVON C, GLOSS B S, WARTON K, et al. Prognostic and diagnostic significance of DNA methylation patterns in high grade serous ovarian cancer[J]. Gynecol Oncol, 2012, 124(3): 582-588. doi: 10.1016/j.ygyno.2011.11.026
|
[16] |
ROBERTSON K D. DNA methylation and human disease[J]. Nat Rev Genet, 2005, 6(8): 597-610. http://www.mendeley.com/catalog/dna-methylation-human-disease-9/
|
[17] |
WU X, LI J, GASSA A, et al. Circulating tumor DNA as an emerging liquid biopsy biomarker for early diagnosis and therapeutic monitoring in hepatocellular carcinoma[J]. Int J Biol Sci, 2020, 16(9): 1551-1562. doi: 10.7150/ijbs.44024
|
[18] |
ZHANG C, LI J Y, HUANG T, et al. Meta-analysis of DNA methylation biomarkers in hepatocellular carcinoma[J]. Oncotarget, 2016, 7(49): 81255-81267. doi: 10.18632/oncotarget.13221
|
[19] |
YANG X F, GAO L, ZHANG S H. Comparative Pan-cancer DNA methylation analysis reveals cancer common and specific patterns[J]. Brief Bioinform, 2017, 18(5): 761-773.
|
[20] |
LI L, CHOI J Y, LEE K M, et al. DNA methylation in peripheral blood: a potential biomarker for cancer molecular epidemiology[J]. J Epidemiol, 2012, 22(5): 384-394. doi: 10.2188/jea.JE20120003
|
[21] |
SHEN S Y, SINGHANIA R, FEHRINGER G, et al. Sensitive tumour detection and classification using plasma cell-free DNA methylomes[J]. Nature, 2018, 563(7732): 579-583. doi: 10.1038/s41586-018-0703-0
|
[22] |
CHURCH T R, WANDELL M, LOFTON-DAY C, et al. Prospective evaluation of methylated SEPT9 in plasma for detection of asymptomatic colorectal cancer[J]. Gut, 2014, 63(2): 317-325. doi: 10.1136/gutjnl-2012-304149
|
[23] |
LIGGETT T E, MELNIKOV A, YI Q L, et al. Distinctive DNA methylation patterns of cell-free plasma DNA in women with malignant ovarian tumors[J]. Gynecol Oncol, 2011, 120(1): 113-120. doi: 10.1016/j.ygyno.2010.09.019
|
[24] |
MAH W C, LEE C G. DNA methylation: potential biomarker in Hepatocellular Carcinoma[J]. Biomark Res, 2014, 2(1): 5. doi: 10.1186/2050-7771-2-5
|
[25] |
WANG W W, CHEN G Y, WANG B, et al. Long non-coding RNA BZRAP1-AS1 silencing suppresses tumor angiogenesis in hepatocellular carcinoma by mediating THBS1 methylation[J]. J Transl Med, 2019, 17(1): 421. doi: 10.1186/s12967-019-02145-6
|
[26] |
LIU A, WU Q, PENG D, et al. A novel strategy for the diagnosis, prognosis, treatment, and chemoresistance of hepatocellular carcinoma: DNA methylation[J]. Med Res Rev, 2020, 40(5): 1973-2018. doi: 10.1002/med.21696
|
[27] |
CHEN G, FAN X, LI Y, et al. Promoter aberrant methylation status of ADRA1A is associated with hepatocellular carcinoma[J]. Epigenetics, 2020, 15(6/7): 684-701. doi: 10.1080/15592294.2019.1709267
|
[28] |
UMETSU S, MIZUKAMI H, SAITO T, et al. Diabetes, an independent poor prognostic factor of non-B non-C hepatocellular carcinoma, correlates with dihydropyrimidinase-like 3 promoter methylation[J]. Sci Rep, 2020, 10(1): 1156. doi: 10.1038/s41598-020-57883-1
|
[29] |
WONG I H, LO Y M, ZHANG J, et al. Detection of aberrant p16 methylation in the plasma and serum of liver cancer patients[J]. Cancer Res, 1999, 59(1): 71-73.
|
[30] |
ZHAO Z H, FAN Y C, YANG Y, et al. Association between Ras association domain family 1A promoter methylation and hepatocellular carcinoma: a meta-analysis[J]. World J Gastroenterol, 2013, 19(41): 7189-7196. doi: 10.3748/wjg.v19.i41.7189
|
[31] |
LI B L, HUANG H, HUANG R H, et al. SEPT9 gene methylation as a noninvasive marker for hepatocellular carcinoma[J]. Dis Markers, 2020, 2020: 6289063. http://www.researchgate.net/publication/346512858_SEPT9_Gene_Methylation_as_a_Noninvasive_Marker_for_Hepatocellular_Carcinoma
|
[32] |
TIAN M P, ZHAO B H, ZHANG J, et al. Association of environmental benzo[a]Pyrene exposure and DNA methylation alterations in hepatocellular carcinoma: a Chinese case-control study[J]. Sci Total Environ, 2016, 541: 1243-1252. doi: 10.1016/j.scitotenv.2015.10.003
|
[33] |
WU H C, YANG H I, WANG Q, et al. Plasma DNA methylation marker and hepatocellular carcinoma risk prediction model for the general population[J]. Carcinogenesis, 2017, 38(10): 1021-1028. doi: 10.1093/carcin/bgx078
|
[34] |
IYER P, ZEKRI A R, HUNG C W, et al. Concordance of DNA methylation pattern in plasma and tumor DNA of Egyptian hepatocellular carcinoma patients[J]. Exp Mol Pathol, 2010, 88(1): 107-111. doi: 10.1016/j.yexmp.2009.09.012
|
[35] |
XU F, ZHANG L L, XU Y X, et al. Hypermethylation of SCAND3 and Myo1g gene are potential diagnostic biomarkers for hepatocellular carcinoma[J]. Cancers, 2020, 12(8): 2332. doi: 10.3390/cancers12082332
|
[36] |
LIU X Y, FAN Y C, GAO S, et al. Methylation of SOX1 and VIM promoters in serum as potential biomarkers for hepatocellular carcinoma[J]. Neoplasma, 2017, 64(5): 745-753. doi: 10.4149/neo_2017_513
|
[37] |
WEI L, HUANG Y, ZHAO R C, et al. Detection of promoter methylation status of suppressor of cytokine signaling 3(SOCS3) in tissue and plasma from Chinese patients with different hepatic diseases[J]. Clin Exp Med, 2018, 18(1): 79-87. doi: 10.1007/s10238-017-0473-2
|
[38] |
XIE G F, XU Y X, XU F, et al. Plasma SGIP1 methylation in diagnosis and prognosis prediction in hepatocellular carcinoma[J]. Neoplasma, 2021, 68(1): 62-70. doi: 10.4149/neo_2020_200623N657
|
[39] |
FEINBERG A P, TYCKO B. The history of cancer epigenetics[J]. Nat Rev Cancer, 2004, 4(2): 143-153. doi: 10.1038/nrc1279
|
[40] |
VAN TONGELEN A, LORIOT A, DE SMET C. Oncogenic roles of DNA hypomethylation through the activation of cancer-germline genes[J]. Cancer Lett, 2017, 396: 130-137. doi: 10.1016/j.canlet.2017.03.029
|
[41] |
RAMZY I I, OMRAN D A, HAMAD O, et al. Evaluation of serum LINE-1 hypomethylation as a prognostic marker for hepatocellular carcinoma[J]. Arab J Gastroenterol, 2011, 12(3): 139-142. doi: 10.1016/j.ajg.2011.07.002
|
[42] |
CHAN K C, JIANG P Y, CHAN C W, et al. Noninvasive detection of cancer-associated genome-wide hypomethylation and copy number aberrations by plasma DNA bisulfite sequencing[J]. Proc Natl Acad Sci USA, 2013, 110(47): 18761-18768. doi: 10.1073/pnas.1313995110
|
[43] |
WEN L, LI J Y, GUO H H, et al. Genome-scale detection of hypermethylated CpG Islands in circulating cell-free DNA of hepatocellular carcinoma patients[J]. Cell Res, 2015, 25(12): 1376. doi: 10.1038/cr.2015.141
|
[44] |
XU R H, WEI W, KRAWCZYK M, et al. Circulating tumour DNA methylation markers for diagnosis and prognosis of hepatocellular carcinoma[J]. Nat Mater, 2017, 16(11): 1155-1161. doi: 10.1038/nmat4997
|
[45] |
KISIEL J B, DUKEK B A, V S R KANIPAKAM R, et al. Hepatocellular carcinoma detection by plasma methylated DNA: discovery, phase I pilot, and phase II clinical validation[J]. Hepatology, 2019, 69(3): 1180-1192. http://www.researchgate.net/publication/327344722_Hepatocellular_Carcinoma_Detection_by_Plasma_Methylated_DNA_Discovery_Phase_I_Pilot_and_Phase_II_Clinical_Validation
|
[46] |
TIAN M M, FAN Y C, ZHAO J, et al. Hepatocellular carcinoma suppressor 1 promoter hypermethylation in serum. A diagnostic and prognostic study in hepatitis B[J]. Clin Res Hepatol Gastroenterol, 2017, 41(2): 171-180. doi: 10.1016/j.clinre.2016.10.003
|
[47] |
DONG X Y, HOU Q, CHEN Y M, et al. Diagnostic value of the methylation of multiple gene promoters in serum in hepatitis B virus-related hepatocellular carcinoma[J]. Dis Markers, 2017, 2017: 2929381. http://pubmedcentralcanada.ca/pmcc/articles/PMC5603249/
|
[48] |
ZHANG C, HUANG C X, SUI X B, et al. Association between gene methylation and HBV infection in hepatocellular carcinoma: a meta-analysis[J]. J Cancer, 2019, 10(25): 6457-6465. doi: 10.7150/jca.33005
|
[49] |
XIANG L, CHEN L M, ZHAI Y J, et al. Hypermethylation of secreted frizzled related protein 2 gene promoter serves as a noninvasive biomarker for HBV-associated hepatocellular carcinoma[J]. Life Sci, 2021, 270: 119061. doi: 10.1016/j.lfs.2021.119061
|
[50] |
ZEKRI A E L-R, NASSAR A A, EL-DIN EL-ROUBY M N, et al. Disease progression from chronic hepatitis C to cirrhosis and hepatocellular carcinoma is associated with increasing DNA promoter methylation[J]. Asian Pac J Cancer Prev, 2014, 14(11): 6721-6726.
|
[51] |
ELSEWIFY W A E, HASSAN E A, MEKKY M A, et al. Usefulness of circulating methylated p16 as a noninvasive molecular biomarker for hepatitis C-related hepatocellular carcinoma with normal serum alpha-fetoprotein levels[J]. Int J Gen Med, 2020, 13: 147-155. doi: 10.2147/IJGM.S249272
|
[52] |
CHALASANI N P, RAMASUBRAMANIAN T S, BHATTACHARYA A, et al. A novel blood-based panel of methylated DNA and protein markers for detection of early-stage hepatocellular carcinoma[J]. Clin Gastroenterol Hepatol, 2020: S1542-S3565(20)31224-6. http://www.sciencedirect.com/science/article/pii/S1542356520312246
|
[53] |
PASHA H F, MOHAMED R H, RADWAN M I. RASSF1A and SOCS1 genes methylation status as a noninvasive marker for hepatocellular carcinoma[J]. Cancer Biomark, 2019, 24(2): 241-247. doi: 10.3233/CBM-181638
|
[54] |
ZHANG Y J, WU H C, SHEN J, et al. Predicting hepatocellular carcinoma by detection of aberrant promoter methylation in serum DNA[J]. Clin Cancer Res, 2007, 13(8): 2378-2384. doi: 10.1158/1078-0432.CCR-06-1900
|
[55] |
LIU M, JIANG L X, GUAN X Y. The genetic and epigenetic alterations in human hepatocellular carcinoma: a recent update[J]. Protein Cell, 2014, 5(9): 673-691. doi: 10.1007/s13238-014-0065-9
|
[56] |
CHEN X, ZHANG J T, RUAN W M, et al. Urine DNA methylation assay enables early detection and recurrence monitoring for bladder cancer[J]. J Clin Invest, 2020, 130(12): 6278-6289. doi: 10.1172/JCI139597
|
[57] |
SHIN S H, LEE K, KIM B H, et al. Bile-based detection of extrahepatic cholangiocarcinoma with quantitative DNA methylation markers and its high sensitivity[J]. J Mol Diagn, 2012, 14(3): 256-263. doi: 10.1016/j.jmoldx.2012.01.014
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